HL_7BTB_043

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7BTB|1|1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BTB_043 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.1336

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7BTB|1|1|C|1923
7BTB|1|1|U|1924
7BTB|1|1|U|1925
7BTB|1|1|C|1926
7BTB|1|1|G|1927
7BTB|1|1|G|1928

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2

Chain p

60S ribosomal protein L43-A

Chain v

Ribosome biogenesis protein RPF2