HL_7BTB_054

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BTB_054 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.2736

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7BTB|1|1|A|2673
7BTB|1|1|A|2674
7BTB|1|1|C|2675
7BTB|1|1|A|2676
7BTB|1|1|G|2677
7BTB|1|1|A|2678
7BTB|1|1|A|2679
7BTB|1|1|A|2680
7BTB|1|1|U|2681

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain J

60S ribosomal protein L11-A