HL_7BTB_064
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 7BTB|1|1|G|3116, 7BTB|1|1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BTB_064 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.1403
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
7BTB|1|1|C|3110
7BTB|1|1|U|3111
7BTB|1|1|G|3112
7BTB|1|1|A|3113
7BTB|1|1|A|3114
7BTB|1|1|C|3115
7BTB|1|1|G|3116
7BTB|1|1|C|3117
7BTB|1|1|C|3118
7BTB|1|1|U|3119
7BTB|1|1|C|3120
7BTB|1|1|U|3121
7BTB|1|1|A|3122
7BTB|1|1|A|3123
7BTB|1|1|G|3124
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain O
- 60S ribosomal protein L16-A
- Chain W
- Ribosome assembly factor MRT4
- Chain r
- Ribosome biogenesis protein NSA2
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