HL_7BTB_071
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GUAUUC
- Length
- 6 nucleotides
- Bulged bases
- 7BTB|1|2|U|125, 7BTB|1|2|U|127, 7BTB|1|2|U|128
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BTB_071 not in the Motif Atlas
- Homologous match to HL_5TBW_076
- Geometric discrepancy: 0.2261
- The information below is about HL_5TBW_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_45177.3
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7BTB|1|2|G|124
7BTB|1|2|U|125
7BTB|1|2|A|126
7BTB|1|2|U|127
7BTB|1|2|U|128
7BTB|1|2|C|129
Current chains
- Chain 2
- RDN5.8-1 rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S ribosomal protein L25
- Chain n
- Pescadillo homolog
- Chain q
- Ribosome biogenesis protein NOP53
Coloring options: