HL_7BTB_076
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- AGUUAUCUUUU
- Length
- 11 nucleotides
- Bulged bases
- 7BTB|1|1|U|1687
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BTB_076 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3319
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7BTB|1|1|A|1679
7BTB|1|1|G|1680
7BTB|1|1|U|1681
7BTB|1|1|U|1682
7BTB|1|1|A|1683
7BTB|1|1|U|1684
7BTB|1|1|C|1685
7BTB|1|1|U|1686
7BTB|1|1|U|1687
7BTB|1|1|U|1688
7BTB|1|1|U|1689
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain U
- 60S ribosomal protein L22-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain u
- Ribosome biogenesis protein RLP24
Coloring options: