HL_7BV8_004

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

7BV8|1|A|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_004 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.165

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7BV8|1|A|U|137
7BV8|1|A|U|138
7BV8|1|A|U|139
7BV8|1|A|C|140
7BV8|1|A|G|141
7BV8|1|A|A|142

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23