HL_7BV8_021

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_021 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.3068

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7BV8|1|A|G|712
7BV8|1|A|G|713
7BV8|1|A|U|714
7BV8|1|A|A|715
7BV8|1|A|A|716
7BV8|1|A|C|717
7BV8|1|A|A|718
7BV8|1|A|C|719

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2