HL_7BV8_067

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7BV8|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BV8_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.105

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7BV8|1|A|G|2819
7BV8|1|A|A|2820
7BV8|1|A|A|2821
7BV8|1|A|G|2822
7BV8|1|A|A|2823
7BV8|1|A|C|2824
7BV8|1|A|G|2825
7BV8|1|A|A|2826
7BV8|1|A|C|2827

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17