HL_7CPJ_006

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

7CPJ|1|A|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_006 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.0801

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7CPJ|1|A|G|123
7CPJ|1|A|G|124
7CPJ|1|A|A|125
7CPJ|1|A|A|126
7CPJ|1|A|A|127
7CPJ|1|A|C|128

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23