HL_7CPJ_015

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7CPJ|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_015 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0954

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7CPJ|1|A|G|410
7CPJ|1|A|G|411
7CPJ|1|A|A|412
7CPJ|1|A|C|413
7CPJ|1|A|C|414
7CPJ|1|A|A|415
7CPJ|1|A|U|416
7CPJ|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15