HL_7CPJ_036

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7CPJ|1|A|U|1396, 7CPJ|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_036 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1194

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7CPJ|1|A|G|1389
7CPJ|1|A|U|1390
7CPJ|1|A|U|1391
7CPJ|1|A|A|1392
7CPJ|1|A|A|1393
7CPJ|1|A|U|1394
7CPJ|1|A|A|1395
7CPJ|1|A|U|1396
7CPJ|1|A|U|1397
7CPJ|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23