HL_7CPJ_063

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_063 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1395

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7CPJ|1|A|C|2551
7CPJ|1|A|OMU|2552
7CPJ|1|A|G|2553
7CPJ|1|A|U|2554
7CPJ|1|A|U|2555
7CPJ|1|A|C|2556
7CPJ|1|A|G|2557

Current chains

Chain A

23S ribosomal RNA

Nearby chains