HL_7CPJ_080

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPJ_080 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1204

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7CPJ|1|a|A|320
7CPJ|1|a|A|321
7CPJ|1|a|C|322
7CPJ|1|a|U|323
7CPJ|1|a|G|324
7CPJ|1|a|A|325
7CPJ|1|a|G|326
7CPJ|1|a|A|327
7CPJ|1|a|C|328
7CPJ|1|a|A|329
7CPJ|1|a|C|330
7CPJ|1|a|G|331
7CPJ|1|a|G|332
7CPJ|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20