HL_7CPV_010

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1003

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7CPV|1|L5|C|367
7CPV|1|L5|G|368
7CPV|1|L5|U|369
7CPV|1|L5|A|370
7CPV|1|L5|A|371
7CPV|1|L5|G|372

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lj

60S ribosomal protein L37

Chain Ll

Ribosomal protein L39-like