HL_7CPV_012

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUGCGGGGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_012 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2224

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

7CPV|1|L5|C|514
7CPV|1|L5|U|515
7CPV|1|L5|G|650
7CPV|1|L5|C|651
7CPV|1|L5|G|652
7CPV|1|L5|G|653
7CPV|1|L5|G|654
7CPV|1|L5|G|655
7CPV|1|L5|G|656

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a