HL_7CPV_024

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GUCUUGGGGCCGAAACGAUCUCAAC

Length

25 nucleotides

Bulged bases

7CPV|1|L5|U|1560, 7CPV|1|L5|A|1568, 7CPV|1|L5|A|1569, 7CPV|1|L5|A|1570, 7CPV|1|L5|G|1572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|G|1556
7CPV|1|L5|U|1557
7CPV|1|L5|C|1558
7CPV|1|L5|U|1559
7CPV|1|L5|U|1560
7CPV|1|L5|G|1561
7CPV|1|L5|G|1562
7CPV|1|L5|G|1563
7CPV|1|L5|G|1564
7CPV|1|L5|C|1565
7CPV|1|L5|C|1566
7CPV|1|L5|G|1567
7CPV|1|L5|A|1568
7CPV|1|L5|A|1569
7CPV|1|L5|A|1570
7CPV|1|L5|C|1571
7CPV|1|L5|G|1572
7CPV|1|L5|A|1573
7CPV|1|L5|U|1574
7CPV|1|L5|C|1575
7CPV|1|L5|U|1576
7CPV|1|L5|C|1577
7CPV|1|L5|A|1578
7CPV|1|L5|A|1579
7CPV|1|L5|C|1580

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like

Chain SP

40S ribosomal protein S15