HL_7CPV_026

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

7CPV|1|L5|G|1672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_026 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.0695

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7CPV|1|L5|G|1667
7CPV|1|L5|G|1668
7CPV|1|L5|U|1669
7CPV|1|L5|A|1670
7CPV|1|L5|A|1671
7CPV|1|L5|G|1672
7CPV|1|L5|C|1673

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like