HL_7CPV_028

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAA

Length

70 nucleotides

Bulged bases

7CPV|1|L5|A|1763, 7CPV|1|L5|U|1783, 7CPV|1|L5|G|1784, 7CPV|1|L5|A|1787, 7CPV|1|L5|G|1791, 7CPV|1|L5|U|1795, 7CPV|1|L5|C|1797, 7CPV|1|L5|C|1799, 7CPV|1|L5|G|1806, 7CPV|1|L5|G|1810, 7CPV|1|L5|U|1811, 7CPV|1|L5|A|1812, 7CPV|1|L5|C|1814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|U|1760
7CPV|1|L5|A|1761
7CPV|1|L5|U|1762
7CPV|1|L5|A|1763
7CPV|1|L5|G|1764
7CPV|1|L5|A|1765
7CPV|1|L5|C|1766
7CPV|1|L5|A|1767
7CPV|1|L5|G|1768
7CPV|1|L5|C|1769
7CPV|1|L5|A|1770
7CPV|1|L5|G|1771
7CPV|1|L5|G|1772
7CPV|1|L5|A|1773
7CPV|1|L5|C|1774
7CPV|1|L5|G|1775
7CPV|1|L5|G|1776
7CPV|1|L5|U|1777
7CPV|1|L5|G|1778
7CPV|1|L5|G|1779
7CPV|1|L5|C|1780
7CPV|1|L5|C|1781
7CPV|1|L5|A|1782
7CPV|1|L5|U|1783
7CPV|1|L5|G|1784
7CPV|1|L5|G|1785
7CPV|1|L5|A|1786
7CPV|1|L5|A|1787
7CPV|1|L5|G|1788
7CPV|1|L5|U|1789
7CPV|1|L5|C|1790
7CPV|1|L5|G|1791
7CPV|1|L5|G|1792
7CPV|1|L5|A|1793
7CPV|1|L5|A|1794
7CPV|1|L5|U|1795
7CPV|1|L5|C|1796
7CPV|1|L5|C|1797
7CPV|1|L5|G|1798
7CPV|1|L5|C|1799
7CPV|1|L5|U|1800
7CPV|1|L5|A|1801
7CPV|1|L5|A|1802
7CPV|1|L5|G|1803
7CPV|1|L5|G|1804
7CPV|1|L5|A|1805
7CPV|1|L5|G|1806
7CPV|1|L5|U|1807
7CPV|1|L5|G|1808
7CPV|1|L5|U|1809
7CPV|1|L5|G|1810
7CPV|1|L5|U|1811
7CPV|1|L5|A|1812
7CPV|1|L5|A|1813
7CPV|1|L5|C|1814
7CPV|1|L5|A|1815
7CPV|1|L5|A|1816
7CPV|1|L5|C|1817
7CPV|1|L5|U|1818
7CPV|1|L5|C|1819
7CPV|1|L5|A|1820
7CPV|1|L5|C|1821
7CPV|1|L5|C|1822
7CPV|1|L5|U|1823
7CPV|1|L5|G|1824
7CPV|1|L5|C|1825
7CPV|1|L5|C|1826
7CPV|1|L5|G|1827
7CPV|1|L5|A|1828
7CPV|1|L5|A|1829

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40