HL_7CPV_035

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGAUGGCCUCCGUUG

Length

15 nucleotides

Bulged bases

7CPV|1|L5|A|2241, 7CPV|1|L5|C|2245, 7CPV|1|L5|U|2247

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|C|2239
7CPV|1|L5|G|2240
7CPV|1|L5|A|2241
7CPV|1|L5|U|2242
7CPV|1|L5|G|2243
7CPV|1|L5|G|2244
7CPV|1|L5|C|2245
7CPV|1|L5|C|2246
7CPV|1|L5|U|2247
7CPV|1|L5|C|2248
7CPV|1|L5|C|2249
7CPV|1|L5|G|2250
7CPV|1|L5|U|2251
7CPV|1|L5|U|2252
7CPV|1|L5|G|2253

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a