HL_7CPV_039

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7CPV|1|L5|U|2385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_039 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2016

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7CPV|1|L5|G|2378
7CPV|1|L5|U|2379
7CPV|1|L5|U|2380
7CPV|1|L5|C|2381
7CPV|1|L5|U|2382
7CPV|1|L5|C|2383
7CPV|1|L5|U|2384
7CPV|1|L5|U|2385
7CPV|1|L5|U|2386

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22