HL_7CPV_054

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GACAUGCUCAUCGUU

Length

15 nucleotides

Bulged bases

7CPV|1|L5|C|3710, 7CPV|1|L5|C|3712, 7CPV|1|L5|G|3716

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|G|3603
7CPV|1|L5|A|3604
7CPV|1|L5|C|3605
7CPV|1|L5|A|3606
7CPV|1|L5|U|3607
7CPV|1|L5|G|3608
7CPV|1|L5|C|3710
7CPV|1|L5|U|3711
7CPV|1|L5|C|3712
7CPV|1|L5|A|3713
7CPV|1|L5|U|3714
7CPV|1|L5|C|3715
7CPV|1|L5|G|3716
7CPV|1|L5|U|3717
7CPV|1|L5|U|3718

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a