HL_7CPV_056

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7CPV|1|L5|G|3848

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_056 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0976

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7CPV|1|L5|C|3846
7CPV|1|L5|U|3847
7CPV|1|L5|G|3848
7CPV|1|L5|G|3849
7CPV|1|L5|G|3850
7CPV|1|L5|G|3851
7CPV|1|L5|C|3852
7CPV|1|L5|G|3853
7CPV|1|L5|G|3854

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29