HL_7CPV_064

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

7CPV|1|L5|G|4128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_064 not in the Motif Atlas

Geometric match to HL_7A0S_067

Geometric discrepancy: 0.3787

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7CPV|1|L5|A|4126
7CPV|1|L5|A|4127
7CPV|1|L5|G|4128
7CPV|1|L5|C|4129
7CPV|1|L5|A|4130
7CPV|1|L5|G|4131
7CPV|1|L5|A|4132
7CPV|1|L5|A|4133
7CPV|1|L5|U|4134
7CPV|1|L5|U|4135

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40