HL_7CPV_069

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7CPV|1|L5|G|4347, 7CPV|1|L5|C|4351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.072

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7CPV|1|L5|C|4341
7CPV|1|L5|U|4342
7CPV|1|L5|G|4343
7CPV|1|L5|A|4344
7CPV|1|L5|A|4345
7CPV|1|L5|C|4346
7CPV|1|L5|G|4347
7CPV|1|L5|C|4348
7CPV|1|L5|C|4349
7CPV|1|L5|U|4350
7CPV|1|L5|C|4351
7CPV|1|L5|U|4352
7CPV|1|L5|A|4353
7CPV|1|L5|A|4354
7CPV|1|L5|G|4355

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40