HL_7CPV_108

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_108 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3917

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7CPV|1|S2|C|1461
7CPV|1|S2|G|1462
7CPV|1|S2|U|1463
7CPV|1|S2|U|1464
7CPV|1|S2|C|1465
7CPV|1|S2|A|1466
7CPV|1|S2|G|1467

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17