HL_7CPV_117

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

7CPV|1|L5|G|1011, 7CPV|1|L5|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|G|1004
7CPV|1|L5|C|1005
7CPV|1|L5|G|1006
7CPV|1|L5|G|1007
7CPV|1|L5|A|1008
7CPV|1|L5|C|1009
7CPV|1|L5|U|1010
7CPV|1|L5|G|1011
7CPV|1|L5|U|1012
7CPV|1|L5|C|1013
7CPV|1|L5|C|1014
7CPV|1|L5|C|1015
7CPV|1|L5|C|1016
7CPV|1|L5|A|1017
7CPV|1|L5|G|1018
7CPV|1|L5|U|1019
7CPV|1|L5|G|1020
7CPV|1|L5|C|1021
7CPV|1|L5|G|1022
7CPV|1|L5|C|1023

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like