HL_7CPV_121

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AGCUCCCUCGCU

Length

12 nucleotides

Bulged bases

7CPV|1|L5|C|4671, 7CPV|1|L5|C|4672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|A|4667
7CPV|1|L5|G|4668
7CPV|1|L5|C|4669
7CPV|1|L5|U|4670
7CPV|1|L5|C|4671
7CPV|1|L5|C|4672
7CPV|1|L5|C|4673
7CPV|1|L5|U|4674
7CPV|1|L5|C|4675
7CPV|1|L5|G|4676
7CPV|1|L5|C|4677
7CPV|1|L5|U|4678

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LU

60S ribosomal protein L22

Chain SI

40S ribosomal protein S8