HL_7CPV_127

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

7CPV|1|L5|C|4671, 7CPV|1|L5|C|4672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_127 not in the Motif Atlas

Homologous match to HL_8P9A_182

Geometric discrepancy: 0.5619

The information below is about HL_8P9A_182

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7CPV|1|L5|C|4669
7CPV|1|L5|U|4670
7CPV|1|L5|C|4671
7CPV|1|L5|C|4672
7CPV|1|L5|C|4673
7CPV|1|L5|U|4674
7CPV|1|L5|C|4675
7CPV|1|L5|G|4676

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LU

60S ribosomal protein L22

Chain SI

40S ribosomal protein S8