HL_7D4I_004

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUC

Length

4 nucleotides

Bulged bases

7D4I|1|5A|U|584

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D4I_004 not in the Motif Atlas

Geometric match to HL_9H3G_103

Geometric discrepancy: 0.3631

The information below is about HL_9H3G_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

7D4I|1|5A|G|552
7D4I|1|5A|A|553
7D4I|1|5A|U|584
7D4I|1|5A|C|585

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5J

rRNA-processing protein FCF2

Chain B6

U3 small nucleolar RNA-associated protein 6

Chain RQ

U3 small nucleolar RNA-associated protein 14