HL_7D4I_016

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D4I_016 not in the Motif Atlas

Geometric match to HL_5AH5_007

Geometric discrepancy: 0.2478

The information below is about HL_5AH5_007

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7D4I|1|SA|A|661
7D4I|1|SA|U|662
7D4I|1|SA|U|663
7D4I|1|SA|U|666
7D4I|1|SA|U|667

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20