HL_7D4I_018
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGUAUUG
- Length
- 7 nucleotides
- Bulged bases
- 7D4I|1|SA|U|781, 7D4I|1|SA|U|782
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D4I_018 not in the Motif Atlas
- Geometric match to HL_1WZ2_007
- Geometric discrepancy: 0.306
- The information below is about HL_1WZ2_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
7D4I|1|SA|C|777
7D4I|1|SA|G|778
7D4I|1|SA|U|779
7D4I|1|SA|A|780
7D4I|1|SA|U|781
7D4I|1|SA|U|782
7D4I|1|SA|G|783
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain 3F
- Ribosomal RNA-processing protein 9
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SF
- 40S ribosomal protein S4-A
- Chain SZ
- 40S ribosomal protein S24-A
- Chain X1
- Unassigned peptides 1
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