HL_7D4I_023

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAACUUAAA

Length

11 nucleotides

Bulged bases

7D4I|1|SA|U|1135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|SA|U|1129
7D4I|1|SA|G|1130
7D4I|1|SA|A|1131
7D4I|1|SA|A|1132
7D4I|1|SA|A|1133
7D4I|1|SA|C|1134
7D4I|1|SA|U|1135
7D4I|1|SA|U|1136
7D4I|1|SA|A|1137
7D4I|1|SA|A|1138
7D4I|1|SA|A|1139

Current chains

Chain SA

18S rRNA

Nearby chains

Chain B2

U3 small nucleolar RNA-associated protein 12

Chain RK

RNA 3'-terminal phosphate cyclase-like protein