HL_7D4I_024

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAGGAUUGACAUUCUUGAUU

Length

20 nucleotides

Bulged bases

7D4I|1|SA|G|1228, 7D4I|1|SA|C|1235, 7D4I|1|SA|U|1257

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|SA|A|1226
7D4I|1|SA|A|1227
7D4I|1|SA|G|1228
7D4I|1|SA|G|1229
7D4I|1|SA|A|1230
7D4I|1|SA|U|1231
7D4I|1|SA|U|1232
7D4I|1|SA|G|1233
7D4I|1|SA|A|1234
7D4I|1|SA|C|1235
7D4I|1|SA|A|1236
7D4I|1|SA|U|1250
7D4I|1|SA|U|1251
7D4I|1|SA|C|1252
7D4I|1|SA|U|1253
7D4I|1|SA|U|1254
7D4I|1|SA|G|1255
7D4I|1|SA|A|1256
7D4I|1|SA|U|1257
7D4I|1|SA|U|1258

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RS

Essential nuclear protein 1