HL_7D4I_027

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

7D4I|1|SA|U|1558, 7D4I|1|SA|A|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|SA|A|1550
7D4I|1|SA|U|1551
7D4I|1|SA|U|1552
7D4I|1|SA|G|1553
7D4I|1|SA|U|1554
7D4I|1|SA|A|1555
7D4I|1|SA|A|1556
7D4I|1|SA|U|1557
7D4I|1|SA|U|1558
7D4I|1|SA|A|1559
7D4I|1|SA|U|1560
7D4I|1|SA|U|1561

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain RJ

Ribosome biogenesis protein BMS1

Chain ST

40S ribosomal protein S18-A