HL_7D4I_028

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

7D4I|1|SA|U|1595, 7D4I|1|SA|C|1596, 7D4I|1|SA|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|SA|G|1594
7D4I|1|SA|U|1595
7D4I|1|SA|C|1596
7D4I|1|SA|A|1597
7D4I|1|SA|U|1598
7D4I|1|SA|C|1599
7D4I|1|SA|A|1600
7D4I|1|SA|G|1601
7D4I|1|SA|C|1602

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RJ

Ribosome biogenesis protein BMS1

Chain RN

Nucleolar complex protein 14

Chain SU

40S ribosomal protein S19-A