HL_7D6Z_002
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCUACAG
- Length
- 7 nucleotides
- Bulged bases
- 7D6Z|1|2|A|35
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D6Z_002 not in the Motif Atlas
- Geometric match to HL_5M3H_001
- Geometric discrepancy: 0.303
- The information below is about HL_5M3H_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_49922.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7D6Z|1|2|C|31
7D6Z|1|2|C|32
7D6Z|1|2|U|33
7D6Z|1|2|A|35
7D6Z|1|2|C|36
7D6Z|1|2|A|38
7D6Z|1|2|G|39
Current chains
- Chain 2
- E-site tRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain f
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- 30S ribosomal protein S7
- Chain r
- 30S ribosomal protein S11
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