HL_7D6Z_003

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCGAUCCC

Length

9 nucleotides

Bulged bases

7D6Z|1|2|U|59, 7D6Z|1|2|C|60

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_003 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.2869

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7D6Z|1|2|G|52
7D6Z|1|2|G|53
7D6Z|1|2|C|56
7D6Z|1|2|G|57
7D6Z|1|2|A|58
7D6Z|1|2|U|59
7D6Z|1|2|C|60
7D6Z|1|2|C|61
7D6Z|1|2|C|62

Current chains

Chain 2

E-site tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA