HL_7D6Z_009
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGCGAAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D6Z_009 not in the Motif Atlas
- Homologous match to HL_6ORD_037
- Geometric discrepancy: 0.4202
- The information below is about HL_6ORD_037
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
7D6Z|1|4|G|52
7D6Z|1|4|G|53
7D6Z|1|4|C|56
7D6Z|1|4|G|57
7D6Z|1|4|A|58
7D6Z|1|4|A|59
7D6Z|1|4|U|60
7D6Z|1|4|C|61
7D6Z|1|4|C|62
Current chains
- Chain 4
- A-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
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