HL_7D6Z_022

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7D6Z|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_022 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0837

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7D6Z|1|A|G|410
7D6Z|1|A|G|411
7D6Z|1|A|A|412
7D6Z|1|A|C|413
7D6Z|1|A|C|414
7D6Z|1|A|A|415
7D6Z|1|A|U|416
7D6Z|1|A|C|417

Current chains

Chain A

23S ribosomal rRNA

Nearby chains