HL_7D6Z_023

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_023 not in the Motif Atlas

Homologous match to HL_7A0S_015

Geometric discrepancy: 0.1128

The information below is about HL_7A0S_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7D6Z|1|A|C|462
7D6Z|1|A|G|463
7D6Z|1|A|U|464
7D6Z|1|A|G|465
7D6Z|1|A|A|466
7D6Z|1|A|G|467

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain c

50S ribosomal protein L34