HL_7D6Z_025

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCUUAGGCG

Length

10 nucleotides

Bulged bases

7D6Z|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_025 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2704

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7D6Z|1|A|C|542
7D6Z|1|A|G|543
7D6Z|1|A|C|544
7D6Z|1|A|U|545
7D6Z|1|A|U|546
7D6Z|1|A|A|547
7D6Z|1|A|G|548
7D6Z|1|A|G|549
7D6Z|1|A|C|550
7D6Z|1|A|G|551

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21