HL_7D6Z_038

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_038 not in the Motif Atlas

Homologous match to HL_9DFE_028

Geometric discrepancy: 0.5764

The information below is about HL_9DFE_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D6Z|1|A|C|1092
7D6Z|1|A|G|1093
7D6Z|1|A|U|1094
7D6Z|1|A|A|1095
7D6Z|1|A|A|1096
7D6Z|1|A|U|1097
7D6Z|1|A|A|1098
7D6Z|1|A|G|1099

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain I

50S ribosomal protein L11

Chain e

50S ribosomal protein L36