HL_7D6Z_042

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

7D6Z|1|A|U|1325, 7D6Z|1|A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_042 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1692

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7D6Z|1|A|G|1324
7D6Z|1|A|U|1325
7D6Z|1|A|U|1326
7D6Z|1|A|A|1327
7D6Z|1|A|A|1328
7D6Z|1|A|U|1329
7D6Z|1|A|C|1330

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22