HL_7D6Z_049

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

7D6Z|1|A|A|1614, 7D6Z|1|A|A|1616, 7D6Z|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_049 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1134

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

7D6Z|1|A|C|1612
7D6Z|1|A|G|1613
7D6Z|1|A|A|1614
7D6Z|1|A|C|1615
7D6Z|1|A|A|1616
7D6Z|1|A|C|1617
7D6Z|1|A|A|1618
7D6Z|1|A|G|1619

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain c

50S ribosomal protein L34