HL_7D6Z_060

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_060 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.3707

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7D6Z|1|A|C|2143
7D6Z|1|A|G|2144
7D6Z|1|A|C|2145
7D6Z|1|A|C|2146
7D6Z|1|A|A|2147
7D6Z|1|A|G|2148

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain r

30S ribosomal protein S11