HL_7D6Z_077

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7D6Z|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_077 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0758

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7D6Z|1|A|G|2819
7D6Z|1|A|A|2820
7D6Z|1|A|A|2821
7D6Z|1|A|G|2822
7D6Z|1|A|A|2823
7D6Z|1|A|C|2824
7D6Z|1|A|G|2825
7D6Z|1|A|A|2826
7D6Z|1|A|C|2827

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17