HL_7D6Z_078

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_078 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.1113

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7D6Z|1|A|A|2856
7D6Z|1|A|G|2857
7D6Z|1|A|C|2858
7D6Z|1|A|G|2859
7D6Z|1|A|A|2860
7D6Z|1|A|U|2861

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain P

50S ribosomal protein L19