HL_7D6Z_092

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_092 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1889

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7D6Z|1|f|G|462
7D6Z|1|f|U|463
7D6Z|1|f|U|464
7D6Z|1|f|A|465
7D6Z|1|f|A|466
7D6Z|1|f|U|467
7D6Z|1|f|A|468
7D6Z|1|f|C|469
7D6Z|1|f|C|470

Current chains

Chain f

16S ribosomal rRNA

Nearby chains