HL_7DUG_026

3D structure

PDB id

7DUG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

7DUG|1|A|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUG_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.1191

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

7DUG|1|A|G|1134
7DUG|1|A|U|1135
7DUG|1|A|U|1136
7DUG|1|A|C|1137
7DUG|1|A|G|1138
7DUG|1|A|G|1139
7DUG|1|A|C|1140

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain I

30S ribosomal protein S9