HL_7DUI_001
3D structure
- PDB id
- 7DUI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- UCUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- 7DUI|1|A|C|13, 7DUI|1|A|U|14, 7DUI|1|A|G|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7DUI_001 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.5918
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31940.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
7DUI|1|A|U|12
7DUI|1|A|C|13
7DUI|1|A|U|14
7DUI|1|A|G|15
7DUI|1|A|A|16
7DUI|1|A|U|17
7DUI|1|A|C|18
7DUI|1|A|C|19
7DUI|1|A|U|20
7DUI|1|A|G|21
7DUI|1|A|G|22
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S5
- Chain Y
- RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')
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